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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
20/03/2024 |
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Actualizado : |
20/03/2024 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
GIANNITTI, F.; MACHADO, M.; SILVEIRA, C.S.; CIBILS-STEWART, X.; BARAIBAR, N.; QUEIROZ-MACHADO, C.R.R.; POPPENGA, R.H.; MENCHACA, A.; UZAL, F.A.; GARCÍA, J.A.; MATTO, C.; DUTRA, F.; RUPRECHTER, G.; CAFFARENA, D.; SARAVIA, A. |
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Afiliación : |
FEDERICO GIANNITTI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MIZAEL MACHADO DA COSTA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CAROLINE DA SILVA SILVEIRA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; XIMENA CIBILS-STEWART, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; NICOLÁS BARAIBAR PEDERSEN, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CINTIA R. R. QUEIROZ-MACHADO, Centro Universitario Regional Noroeste, Universidad de la República, Tacuarembó, Uruguay; ROBERT H. POPPENGA, School of Veterinary Medicine, University of California, Davis, Davis CA, United States; JOSE ALEJO MENCHACA BARBEITO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FRANCISCO A. UZAL, School of Veterinary Medicine, University of California, Davis, San Bernardino, CA, United States; JUAN A. GARCÍA, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible, Balcarce, Argentina; CAROLINA MATTO, División Laboratorios Veterinarios, Ministerio de Ganadería, Agricultura y Pesca, Paysandú, Uruguay; FERNANDO DUTRA, División Laboratorios Veterinarios, Ministerio de Ganadería, Agricultura y Pesca, Treinta y Tres, Uruguay; GRETEL RUPRECHTER, Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay; RUBEN DARÍO CAFFARENA LEDESMA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay; ANDERSON SARAVIA DE MELO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. |
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Título : |
Experimental oral administration of pollen beetle (Astylus atromaculatus) to cattle results in an acute lethal gastrointestinal disease. |
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Complemento del título : |
Research article. |
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Fecha de publicación : |
2024 |
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Fuente / Imprenta : |
Veterinary Pathology. 2024. https://doi.org/10.1177/03009858241231557 -- [In Press] |
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ISSN : |
0300-9858 |
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DOI : |
10.1177/03009858241231557 |
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Idioma : |
Inglés |
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Notas : |
Article history: First published online March 4, 2024. -- Correspondence: Federico Giannitti, Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, Estación Experimental La Estanzuela, Ruta 50 km 11, Semillero 70006, Colonia, Uruguay.
Email: fgiannitti@inia.org.uy -- Funding: This work was funded by grant P__27 from the "Instituto Nacional de Investigación Agropecuaria" (INIA), Uruguay. -- |
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Contenido : |
ABSTRACT.- In the summer of 2023, ingestion of Astylus atromaculatus (pollen beetle) was linked to spontaneous fatal disease in grazing cattle and sheep in Argentina and Uruguay. While the disease was experimentally reproduced in sheep and guinea pigs in the 1970's, no experimental reproductions have been attempted in cattle, and controversy exists as to whether this insect is indeed noxious to cattle and at which dose. Here, we demonstrate that A. atromaculatus causes acute fatal disease in Hereford calves at single oral dosages of 2.5, 4.5, 10.0, and 15.0 g of insect/kg body weight. Death or severe disease necessitating euthanasia occurred at 38 to 48 hours postinoculation regardless of the dose, suggesting that the single fatal dosage is likely <2.5 g/kg body weight (this dose representing approximately 850 mL of intact beetles in a 100 kg calf). Clinically, the disease was characterized by acute anorexia, prolonged recumbency, reluctance to move, listlessness/apathy, depression, ruminal hypomotility and tympany, hypothermia, bruxism with frothing at the mouth, and mucoid diarrhea progressing to death. Hematologic and biochemical alterations included hemoconcentration, stress/acute inflammatory leukogram, negative energy balance, and ketosis. The pathological hallmark of this experimental disease is acute necrotizing omaso-reticulo-rumenitis, fibrinohemorrhagic enteritis, and exfoliative colitis with intralesional chitinous insect fragments. While A. atromaculatus might contain a gastrointestinal toxin or pathogen, extensive toxicological testing failed to identify a causative toxin. Other pathomechanisms such as direct physical damage caused by insect fragments on the alimentary tract seem plausible, although further studies are needed to elucidate the pathogenesis of A. atromaculatus-associated disease. © The Author(s) 2024. MenosABSTRACT.- In the summer of 2023, ingestion of Astylus atromaculatus (pollen beetle) was linked to spontaneous fatal disease in grazing cattle and sheep in Argentina and Uruguay. While the disease was experimentally reproduced in sheep and guinea pigs in the 1970's, no experimental reproductions have been attempted in cattle, and controversy exists as to whether this insect is indeed noxious to cattle and at which dose. Here, we demonstrate that A. atromaculatus causes acute fatal disease in Hereford calves at single oral dosages of 2.5, 4.5, 10.0, and 15.0 g of insect/kg body weight. Death or severe disease necessitating euthanasia occurred at 38 to 48 hours postinoculation regardless of the dose, suggesting that the single fatal dosage is likely <2.5 g/kg body weight (this dose representing approximately 850 mL of intact beetles in a 100 kg calf). Clinically, the disease was characterized by acute anorexia, prolonged recumbency, reluctance to move, listlessness/apathy, depression, ruminal hypomotility and tympany, hypothermia, bruxism with frothing at the mouth, and mucoid diarrhea progressing to death. Hematologic and biochemical alterations included hemoconcentration, stress/acute inflammatory leukogram, negative energy balance, and ketosis. The pathological hallmark of this experimental disease is acute necrotizing omaso-reticulo-rumenitis, fibrinohemorrhagic enteritis, and exfoliative colitis with intralesional chitinous insect fragments. While A. atromaculatus might c... Presentar Todo |
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Palabras claves : |
Alimentary tract; Astylus atromaculatus; Bovine; Enteritis; Experimental disease; Insects; PLATAFORMA DE INVESTIGACIÓN EN SALUD ANIMAL - INIA; Rumenitis; South America. |
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Asunto categoría : |
L01 Ganadería |
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Marc : |
LEADER 03582naa a2200433 a 4500
001 1064506
005 2024-03-20
008 2024 bl uuuu u00u1 u #d
022 $a0300-9858
024 7 $a10.1177/03009858241231557$2DOI
100 1 $aGIANNITTI, F.
245 $aExperimental oral administration of pollen beetle (Astylus atromaculatus) to cattle results in an acute lethal gastrointestinal disease.$h[electronic resource]
260 $c2024
500 $aArticle history: First published online March 4, 2024. -- Correspondence: Federico Giannitti, Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, Estación Experimental La Estanzuela, Ruta 50 km 11, Semillero 70006, Colonia, Uruguay. Email: fgiannitti@inia.org.uy -- Funding: This work was funded by grant P__27 from the "Instituto Nacional de Investigación Agropecuaria" (INIA), Uruguay. --
520 $aABSTRACT.- In the summer of 2023, ingestion of Astylus atromaculatus (pollen beetle) was linked to spontaneous fatal disease in grazing cattle and sheep in Argentina and Uruguay. While the disease was experimentally reproduced in sheep and guinea pigs in the 1970's, no experimental reproductions have been attempted in cattle, and controversy exists as to whether this insect is indeed noxious to cattle and at which dose. Here, we demonstrate that A. atromaculatus causes acute fatal disease in Hereford calves at single oral dosages of 2.5, 4.5, 10.0, and 15.0 g of insect/kg body weight. Death or severe disease necessitating euthanasia occurred at 38 to 48 hours postinoculation regardless of the dose, suggesting that the single fatal dosage is likely <2.5 g/kg body weight (this dose representing approximately 850 mL of intact beetles in a 100 kg calf). Clinically, the disease was characterized by acute anorexia, prolonged recumbency, reluctance to move, listlessness/apathy, depression, ruminal hypomotility and tympany, hypothermia, bruxism with frothing at the mouth, and mucoid diarrhea progressing to death. Hematologic and biochemical alterations included hemoconcentration, stress/acute inflammatory leukogram, negative energy balance, and ketosis. The pathological hallmark of this experimental disease is acute necrotizing omaso-reticulo-rumenitis, fibrinohemorrhagic enteritis, and exfoliative colitis with intralesional chitinous insect fragments. While A. atromaculatus might contain a gastrointestinal toxin or pathogen, extensive toxicological testing failed to identify a causative toxin. Other pathomechanisms such as direct physical damage caused by insect fragments on the alimentary tract seem plausible, although further studies are needed to elucidate the pathogenesis of A. atromaculatus-associated disease. © The Author(s) 2024.
653 $aAlimentary tract
653 $aAstylus atromaculatus
653 $aBovine
653 $aEnteritis
653 $aExperimental disease
653 $aInsects
653 $aPLATAFORMA DE INVESTIGACIÓN EN SALUD ANIMAL - INIA
653 $aRumenitis
653 $aSouth America
700 1 $aMACHADO, M.
700 1 $aSILVEIRA, C.S.
700 1 $aCIBILS-STEWART, X.
700 1 $aBARAIBAR, N.
700 1 $aQUEIROZ-MACHADO, C.R.R.
700 1 $aPOPPENGA, R.H.
700 1 $aMENCHACA, A.
700 1 $aUZAL, F.A.
700 1 $aGARCÍA, J.A.
700 1 $aMATTO, C.
700 1 $aDUTRA, F.
700 1 $aRUPRECHTER, G.
700 1 $aCAFFARENA, D.
700 1 $aSARAVIA, A.
773 $tVeterinary Pathology. 2024. https://doi.org/10.1177/03009858241231557 -- [In Press]
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Registro original : |
INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
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Fecha actual : |
29/09/2014 |
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Actualizado : |
25/10/2017 |
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Tipo de producción científica : |
Poster |
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Autor : |
BRANDARIZ, S.P.; GONZÁELZ-REYMÚNDEZ, A.; LADO, B.; QUINCKE, M.; VON ZITZEWITZ, J.; CASTRO, M.; MATUS, I.; DEL POZO, A.; GUTIÉRREZ, L. |
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Afiliación : |
BETTINA LADO LINDNER, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay; MARTIN CONRADO QUINCKE WALDEN, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay; JARISLAV RAMON VON ZITZEWITZ VON SALVIATI, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay; MARINA CASTRO DERENYI, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay. |
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Título : |
Effect of using imputed missing data on QTL detection on a wheat GWAS panel. |
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Fecha de publicación : |
2014 |
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Fuente / Imprenta : |
In: SEMINARIO INTERNACIONAL DE TRIGO, 2014, La Estanzuela, Colonia, UY. GERMÁN, S., et al. (Org.). 1914-2014, un siglo de mejoramiento de trigo en La Estanzuela: un valioso legado para el futuro: posters; resúmenes. La Estanzuela, Colonia, UY: INIA, 2014. |
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Páginas : |
p. 86. |
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Idioma : |
Inglés |
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Contenido : |
Molecular markers are an essential component of plant and animal breeding programs. One inexpensive way of obtaining molecular markers is through Next-Generation Sequencing (NGS). Genotyping-by-sequencing (GBS) is one of the NGS techniques which have been successfully used for complex genomes like wheat. A particularity of GBS is that it generates a lot of missing information which is generally imputed. Imputation is required for Genomic Prediction studies and several studies demonstrate its value. However, the effectiveness of missing data imputation for Genome-wide association (GWAS) studies has not been demonstrated. Data imputation for GWAS where one marker at a time is being studied could potentially create biased estimates. The aim of this study was to compare the effects of using either missing or imputed data for Quantitative Trait Loci (QTL) detection in a wheat GWAS pannel. A set of 384 advanced lines of wheat was included in this study consisting of 186 genotypes from INIA (Instituto Nacional de Investigación Agropecuaria) in Uruguay, 55 genotypes from INIA in Chile and 143 genotypes from CIMMYT (Centro Internacional de Mejoramiento de Maíz y Trigo). SNPs were obtained using the Tassel-GBS Pipeline. We excluded SNPs with more than 50 % missing data and SNPs with a minor allele frequency (MAF) more extreme than 10%. Sequence database available from the SyntheticxOpata map (synop) was used to construct the maps, obtaining a final data set with more than 18K SNPs. Missing data was handled in three different ways to create the SNP datasets used for QTL detection: 1) data not-imputed, 2) data imputed by the realized relationship matrix method multivariate normal expectation maximization (MVN-EM), and 3) data imputed by the mean. A number of QTL (either 25 or 50) with different heritability (0.2 and 0.7) were simulated on top of each dataset. The following mixed model was used to recover QTL: , where : phenotypic vector, : SNPs matrix, : unknown vector of allele effects to be estimated, : matrix that relates each measurement to population origin, : populations vector, : kinship matrix, : vector of random background polygenic effects, and : residual error. We used a liberal 0.01 significance level. The power to detect QTL was estimated for each dataset and differences among medians of QTL detection power among imputed datasets were studied using the Friedman test and non-parametric contrasts. For this purpose, methods of imputations were defined as treatments and simulation scenarios as blocks. The QTL detection power with the MVN-EM matrix was lower than with the mean imputed matrix or the no imputed matrix. No differences in QTL detection power were found between the mean imputed matrix or the no imputed matrix. Based on our results, imputing does not seem to improve QTL detection power. MenosMolecular markers are an essential component of plant and animal breeding programs. One inexpensive way of obtaining molecular markers is through Next-Generation Sequencing (NGS). Genotyping-by-sequencing (GBS) is one of the NGS techniques which have been successfully used for complex genomes like wheat. A particularity of GBS is that it generates a lot of missing information which is generally imputed. Imputation is required for Genomic Prediction studies and several studies demonstrate its value. However, the effectiveness of missing data imputation for Genome-wide association (GWAS) studies has not been demonstrated. Data imputation for GWAS where one marker at a time is being studied could potentially create biased estimates. The aim of this study was to compare the effects of using either missing or imputed data for Quantitative Trait Loci (QTL) detection in a wheat GWAS pannel. A set of 384 advanced lines of wheat was included in this study consisting of 186 genotypes from INIA (Instituto Nacional de Investigación Agropecuaria) in Uruguay, 55 genotypes from INIA in Chile and 143 genotypes from CIMMYT (Centro Internacional de Mejoramiento de Maíz y Trigo). SNPs were obtained using the Tassel-GBS Pipeline. We excluded SNPs with more than 50 % missing data and SNPs with a minor allele frequency (MAF) more extreme than 10%. Sequence database available from the SyntheticxOpata map (synop) was used to construct the maps, obtaining a final data set with more than 18K SNPs. Mi... Presentar Todo |
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Palabras claves : |
GBS; GENOMIC PREDICTION; GENOMIC WIDE ASSOCIATION; GENOTYPING BY SEQUENCING; GWAS; MARCADORES MOLECULARES; MULTIVARIATE NORMAL EXPECTATION MAXIMIZATION; MVN-EM; NEXT GENERATION SEQUENCING; NGS; QTL; QUANTITATIVE TRAIT LOCI DETECTION; SINGLE NUCLEOTIDE POLYMORPHISMS; SNPs; TRITICUM. |
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Thesagro : |
DETECCIÓN DE QTLS; MARCADORES MOLECULARES; TRIGO. |
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Asunto categoría : |
-- |
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Marc : |
LEADER 04260nam a2200433 a 4500
001 1050639
005 2017-10-25
008 2014 bl uuuu u00u1 u #d
100 1 $aBRANDARIZ, S.P.
245 $aEffect of using imputed missing data on QTL detection on a wheat GWAS panel.
260 $aIn: SEMINARIO INTERNACIONAL DE TRIGO, 2014, La Estanzuela, Colonia, UY. GERMÁN, S., et al. (Org.). 1914-2014, un siglo de mejoramiento de trigo en La Estanzuela: un valioso legado para el futuro: posters; resúmenes. La Estanzuela, Colonia, UY: INIA$c2014
300 $ap. 86.
520 $aMolecular markers are an essential component of plant and animal breeding programs. One inexpensive way of obtaining molecular markers is through Next-Generation Sequencing (NGS). Genotyping-by-sequencing (GBS) is one of the NGS techniques which have been successfully used for complex genomes like wheat. A particularity of GBS is that it generates a lot of missing information which is generally imputed. Imputation is required for Genomic Prediction studies and several studies demonstrate its value. However, the effectiveness of missing data imputation for Genome-wide association (GWAS) studies has not been demonstrated. Data imputation for GWAS where one marker at a time is being studied could potentially create biased estimates. The aim of this study was to compare the effects of using either missing or imputed data for Quantitative Trait Loci (QTL) detection in a wheat GWAS pannel. A set of 384 advanced lines of wheat was included in this study consisting of 186 genotypes from INIA (Instituto Nacional de Investigación Agropecuaria) in Uruguay, 55 genotypes from INIA in Chile and 143 genotypes from CIMMYT (Centro Internacional de Mejoramiento de Maíz y Trigo). SNPs were obtained using the Tassel-GBS Pipeline. We excluded SNPs with more than 50 % missing data and SNPs with a minor allele frequency (MAF) more extreme than 10%. Sequence database available from the SyntheticxOpata map (synop) was used to construct the maps, obtaining a final data set with more than 18K SNPs. Missing data was handled in three different ways to create the SNP datasets used for QTL detection: 1) data not-imputed, 2) data imputed by the realized relationship matrix method multivariate normal expectation maximization (MVN-EM), and 3) data imputed by the mean. A number of QTL (either 25 or 50) with different heritability (0.2 and 0.7) were simulated on top of each dataset. The following mixed model was used to recover QTL: , where : phenotypic vector, : SNPs matrix, : unknown vector of allele effects to be estimated, : matrix that relates each measurement to population origin, : populations vector, : kinship matrix, : vector of random background polygenic effects, and : residual error. We used a liberal 0.01 significance level. The power to detect QTL was estimated for each dataset and differences among medians of QTL detection power among imputed datasets were studied using the Friedman test and non-parametric contrasts. For this purpose, methods of imputations were defined as treatments and simulation scenarios as blocks. The QTL detection power with the MVN-EM matrix was lower than with the mean imputed matrix or the no imputed matrix. No differences in QTL detection power were found between the mean imputed matrix or the no imputed matrix. Based on our results, imputing does not seem to improve QTL detection power.
650 $aDETECCIÓN DE QTLS
650 $aMARCADORES MOLECULARES
650 $aTRIGO
653 $aGBS
653 $aGENOMIC PREDICTION
653 $aGENOMIC WIDE ASSOCIATION
653 $aGENOTYPING BY SEQUENCING
653 $aGWAS
653 $aMARCADORES MOLECULARES
653 $aMULTIVARIATE NORMAL EXPECTATION MAXIMIZATION
653 $aMVN-EM
653 $aNEXT GENERATION SEQUENCING
653 $aNGS
653 $aQTL
653 $aQUANTITATIVE TRAIT LOCI DETECTION
653 $aSINGLE NUCLEOTIDE POLYMORPHISMS
653 $aSNPs
653 $aTRITICUM
700 1 $aGONZÁELZ-REYMÚNDEZ, A.
700 1 $aLADO, B.
700 1 $aQUINCKE, M.
700 1 $aVON ZITZEWITZ, J.
700 1 $aCASTRO, M.
700 1 $aMATUS, I.
700 1 $aDEL POZO, A.
700 1 $aGUTIÉRREZ, L.
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